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How to deploy BioCloud on own HPC cluster

1.1 Download package

BioCloud is a cloud service which dedicated developed for High Performance Computing (HPC) cluster. Currently,it run on the Portable Batch System(PBS) based Cluster System. In the near future, the Load Sharing Facility (LSF) based Cluster will be supported. The downloaded package consists of two parts that is Web Portal and Cluster Service.

The lasted download packages have been updated on 2016.01.21

Web Portal Package	download
Cluster Service Package	download

The description of package as followings.

The contents of Web Portal package

File	Description
biocloud.sql	The MySQL database schema for BioCloud as we use MySQL to store information from web portal
biocloud.war	The whole web project for BioCloud which must be deployed on Tomcat
install.pdf	An installation document

The contents of Cluster Service package

File	Description
biocluster.sql	The MySQL database schema for BioCloud as we use MySQL to store information from web portal
biocluster.war	The whole web project for BioCloud which must be deployed on Tomcat
script2015.tar.gz	All the scripts of pre-installed applications
install.pdf	An installation document

1.2 How to deploy BioCloud package

The detailed deployed document can be downloaded from here.

1.2.1 Software Requirement

Web Portal	Cluster Service
Operation system: Linux 64-bit JDK 1.6 download MySQL 5.1.47 download Tomcat 6.0.26 download	Operation system: Linux 64-bit JDK 1.6 download MySQL 5.1.47 download Tomcat 6.0.26 download PBS

1.2.2 Installation

BioCloud is developed based on JSP and several popular frameworks including Struts, Spring, MyBatis. MySQL database used to store the operation information.Users need to load the given database schema into the database and deploy the whole web applications under Tomcat environment. The detailed operations can be found from the deployment document.

1.2.3 Configuration

In the package, we provide a default configuration for database and PBS.Users need to modify the default value according to their own acquirement. The detailed configurations can be found from the deployment document.